selected papers | structures |
full list (International Journals | Korean Journals )
 

full list : International Journals


Kyeong Kyu Kim
Sungkyunkwan University - School of Medicine
Suwon 440-746, Korea



150. Ubiquitin-specific protease 4 (USP4) suppresses myoblast differentiation in a catalytic-independent manner.
Cellular signaling. 2017 in press

149. Characterization of a novel SGNH-type esterase from Lactobacillus plantarum.
Kim Y, Ryu BH, Kim J, Yoo W, An DR, Kim BY, Kwon S, Lee S, Wang Y, Kim KK, Kim TD.
Int J Biol Macromol. 2017 Mar;96:560-568. doi: 10.1016/j.ijbiomac.2016.12.061.

148. "Identification and Crystallization of Penicillin-Binding Protein/-Lactamase Homolog (Rp46) from Ruegeria Pomeroyi
Ryu BH, Ngo TD, Yoo W, Kim KK, Kim TD
Crystals 2017, 29 December 2016 7(1), 6; doi:10.3390/cryst7010006

147. Structural and functional study of ChuY from Escherichia coli strain CFT073.
Kim H, Chaurasia AK, Kim T, Choi J, Ha SC, Kim D, Kim KK.
Biochem Biophys Res Commun. 2016 Dec 2. pii: S0006-291X(16)32052-6. doi: 10.1016/j.bbrc.2016.12.008. [Epub ahead of print]

146. The mutational landscape of ocular marginal zone lymphoma identifies frequent alterations in TNFAIP3 followed by mutations in TBL1XR1 and CREBBP.
Jung H, Yoo HY, Lee SH, Shin S, Kim SC, Lee S, Joung JG, Nam JY, Ryu D, Yun JW, Choi JK, Ghosh A, Kim KK, Kim SJ, Kim WS, Park WY, Ko YH.
Oncotarget. 2017 Jan 31. doi: 10.18632/oncotarget.14928. [Epub ahead of print]

145. Biochemical and Structural Analysis of a Novel Esterase from Caulobacter crescentus related to Penicillin-Binding Protein (PBP).
Ryu BH,?Ngo TD,?Yoo W,?Lee S,?Kim BY,?Lee E,?Kim KK,?Kim TD
Sci Rep. 2016 2016 dec 1: 6(37978)

144. Bioinorganic Nanohybrid Catalyst for Multistep Synthesis of Acetaminophen, an Analgesic.
Boi Hoa San, Subramaniyam Ravichandran, Kwang-su Park, Vinod Kumar Subramani, and Kyeong Kyu Kim.
ACS Appl. Mater. Interfaces.?2016,?8?(44), pp 30058?30065

143. An ubiquitin-binding molecule can work as an inhibitor of ubiquitin processing enzymes and ubiquitin receptors.
Nguyen T, Ho M, Ghosh A, Kim T, Yun SI, Lee SS, Kim KK.
Biochem Biophys Res Commun. 2016 Oct 7;479(1):33-9. doi: 10.1016/j.bbrc.2016.09.010. Epub 2016 Sep 7.

142. Coupling of radiofrequency with magnetic nanoparticles treatment as an alternative physical antibacterial strategy against multiple drug resistant bacteria.
Chaurasia AK, Thorat ND, Tandon A, Kim JH, Park SH, Kim KK. Sci Rep. 2016 Sep 27;6:33662. doi: 10.1038/srep33662.

141. Structural studies on the extracellular domain of sensor histidine kinase YycG from Staphylococcus aureus and its functional implications.
Kim T, Choi J, Lee S, Yeo KJ, Cheong HK, Kim KK.
J Mol Biol. 2016 Jul 4. pii: S0022-2836(16)30241-8. doi: 10.1016/j.jmb.2016.06.019. [Epub ahead of print]

140. Structural and functional studies of a large winged Z-DNA binding domain of Danio rerio protein kinase PKZ.
Subramani VK, Kim D, Yun K, Kim KK.
FEBS Lett. 2016 Jul;590(14):2275-85. doi: 10.1002/1873-3468.12238.

139. Examining cooperative binding of Sox2 on DC5 regulatory element upon complex formation with Pax6 through excess electron transfer assay.
Saha A, Kizaki S, De D, Endo M, Kim KK*, Sugiyama H*
Nucleic Acids Res. 2016 Aug 19;44(14):e125. doi: 10.1093/nar/gkw478

138. Structural and Biochemical Characterization of an Octameric Carbohydrate Acetylesterase from Sinorhizobium meliloti.
Oh C, Ryu BH, An DR, Nguyen DD, Yoo W, Kim T, Ngo TD, Kim HS, Kim KK, Kim TD.
FEBS Lett. 2016 2016 Apr;590(8):1242-52

137. Design of a RANK-mimetic peptide inhibitor of osteoclastogenesis with enhanced RANKL-binding affinity.
Hur J, Ghosh A, Kim K, Ta HM, Kim H, Kim N, Hwang HY, Kim KK.
Mol Cells. 2016 Apr 30;39(4):316-21

136. Ubiquitin-specific protease 4 controls metastatic potential through -catenin stabilization in brain metastatic lung adenocarcinoma.
Hwang SJ, Lee HW, Kim HR, Lee H, Shin CH, Yun SI, Lee DH, Kim DH, Kim KK, Joo KM, Kim HH.
Sci Rep. 2016 Feb 17;6:21596. doi: 10.1038/srep21596.

135. Solution structure of the Z-DNA binding domain of PKR-like protein kinase (PKZ) from Carassius auratus and quantitative analyses of the intermediate complex during B?Z transition.
Lee AR, Park CJ, Cheong HK, Ryu KS, Park JW, Kwon MY, Lee J, Kim KK, Choi BS, Lee JH.
Nucleic Acids Res. 2016 Apr 7;44(6):2936-48

134. Photocurrent enhancement of SiNW-FETs by integrating protein-shelled CdSe quantum dots.
Moh SH, Kulkarni A, San BH, Lee JH, Kim D, Park KS, Lee MH, Kim T, Kim KK
Nanoscale, 2016

133. Combining suppression of stemness with lineage-specific induction leads to selective conversion of pluripotent cells into functional neurons.
Halder D, Chang GE, De D, Cheong E, Kim KK, Shin I
Chemistry and Biology 2015

132. Preparation of cobalt nanoparticles from polymorphic bacterialtemplates: A novel platform for biocatalysis.
Jang E, Shim HW, Ryu BH, An DR, Yoo WK, Kim KK, Kim DW, Kim TD
Int J Biol Macromol. 2015 Sep 7;81:747-753

131. Crystal structure analysis of c4763, a uropathogenic Escherichia coli-specific protein.
Kim H, Choi J, Kim D, Kim KK
Acta Crystallogr F Struct Biol Commun. 2015 Aug;71(Pt 8):1042-7

130. Ubiquitin specific protease 4 positively regulates the WNT/?catenin signaling in colorectal cancer.
Yun SI, Kim HH, Yoon JH, Park WS, Hahn MJ, Kim HC, Chung CH, Kim KK
Mol Oncol. 2015 Nov;9(9):1834-51

129. Structural basis for the substrate selectivity of a HAD phosphatase from Thermococcus onnurineus NA1.
Ngo TD, Van Le B, Subramani VK, Thi Nguyen CM, Lee HS, Cho Y, Kim KK, Hwang HY
Biochem Biophys Res Commun. 2015 May 22;461(1):122-7

128. Combining Protein-Shelled Platinum Nanoparticles with Graphene to Build a Bionanohybrid Capacitor.
San BH, Kim JA, Kulkarni A, Moh SH, Dugasani SR, Subramani VK, Thorat ND, Lee HH,Park SH, Kim T, Kim KK
ACS Nano. 2014 Dec 23;8(12):12120-9

127. Structural and biochemical characterization of a carbohydrate acetylesterase from Sinorhizobium meliloti 1021.
Kim K, Ryu BH, Kim SS, An DR, Ngo TD, Pandian R, Kim KK, Kim TD
FEBS Lett. 2015 Jan 2;589(1):117-22

126. Crystallographic analysis and biochemical applications of a novel penicillin-binding protein/b-lactamase homologue from a metagenomic library.
Ngo TD, Ryu BH, Ju H, Jang E, Kim KK, Kim TD
Acta Crystallogr D Biol Crystallogr. 2014 Sep;70(Pt 9):2455-2466

125. Interaction of TIF-90 and Filamin A in the Regulation of rRNA Synthesis in Leukemic Cells.
Nguyen LX, Chan SM, Ngo TD, Raval A, Kim KK, Majeti R, Mitchell BS
Blood. 2014 Jul 24;124(4):579-89

124. Novel Interaction of the Z-DNA Binding Domain of Human ADAR1 with the Oncogenic c-Myc Promoter G-Quadruplex.
Kang HJ, Le TV, Kim K, Hur J, Kim KK, Park HJ
J Mol Biol. 2014 Jul 15;426(14):2594-604

123. Structural and kinetic bases for the metal preference of the M18 aminopeptidase from Pseudomonas aeruginosa.
Nguyen DD, Pandian R, Kim D, Ha SC, Yoon HJ, Kim KS, Yun KH, Kim JH, Kim KK
Biochem Biophys Res Commun. 2014 Apr 25;447(1):101-7

122. Distinct Rayleigh Scattering from Hot Spot Mutant p53 Proteins Reveals Cancer Cells.
Jun HJ, Nguyen AH, Kim YH, Park KH, Kim D, Kim KK, Sim SJ
Small. 2014 Jul;10(14):2954-62

121. Single molecule visualization and characterization of Sox2-Pax6 complex formation on a regulatory DNA element using a DNA origami frame.
Yamamoto S, De D, Hidaka K, Kim KK, Endo M, Sugiyama H
Nano Lett. 2014 May 14;14(5):2286-92
doi: 10.1021/nl4044949. Epub 2014 Apr 4

120. Radiofrequency treatment enhances the catalytic function of an immobilized nanobiohybrid catalyst.
San BH, Ha EJ, Paik HJ, Kim KK
Nanoscale. 2014 Jun 7;6(11):6009-17
doi: 10.1039/c4nr00407h. Epub 2014 Apr 29

119. P42 Ebp1 regulates the proteasomal degradation of the p85 regulatory subunit of PI3K by recruiting a chaperone-E3 ligase complex HSP70/CHIP.
Ko HR, Kim CK, Lee SB, Song J, Lee KH, Kim KK, Park KW, Cho SW, Ahn JY
Cell Death Dis. 2014 Mar 20;5:e1131. doi: 10.1038/cddis.2014.79

118. Crystallization and preliminary X-ray analysis of a novel type of lipolytic hydrolase from Bacillus licheniformis.
Ju H, Pandian R, Kim K, Kim KK, Kim TD
Acta Crystallogr F Struct Biol Commun. 2014 Apr;70(Pt 4):473-5

117. Distinct Z-DNA binding mode of a PKR-like protein kinase containing a Z-DNA binding domain (PKZ).
Kim D, Hur J, Park K, Bae S, Shin D, Ha SC, Hwang HY, Hohng S, Lee JH, Lee S, Kim YG, Kim KK
Nucleic Acids Res. 2014 May 1;42(9):5937-48
doi: 10.1093/nar/gku189. Epub 2014 Mar 20

116. Structural insights into the molecular mechanism of Escherichia coli SdiA, a quorum-sensing receptor.
Kim T, Duong T, Wu CA, Choi J, Lan N, Kang SW, Lokanath NK, Shin D, Hwang HY, Kim KK
Acta Crystallogr D Biol Crystallogr. 2014 Mar;70(Pt 3):694-707

115. Structural and functional characterization of an Isd-type haem-degradation enzyme from Listeria monocytogenes.
Duong T, Park K, Kim T, Kang SW, Hahn MJ, Hwang HY, Kim KK
Acta Crystallogr D Biol Crystallogr. 2014 Mar;70(Pt 3):615-26

114. Crystallization and preliminary X-ray analysis of a highly stable novel SGNH hydrolase (Est24) from Sinorhizobium meliloti.
Ryu BH, Nguyen DD, Ngo TD, Oh C, Pandian R, Kim KK, Kim TD
Acta Crystallogr F Struct Biol Commun. 2014 Feb 1;70(Pt 2):193-5
doi: 10.1107/S2053230X13033918. Epub 2014 Jan 21

113. Inhibition of master transcription factors in pluripotent cells induces early stage differentiation.
De D, Jeong MH, Leem YE, Svergun DI, Wemmer DE, Kang JS, Kim KK, Kim SH
Proc Natl Acad Sci U S A. 2014 Feb 14; 111(5): 1778-83

112. Descriptor-Based Profile Analysis of Kinase Inhibitors to Predict Inhibitory Activity and to Grasp Kinase Selectivity.
Park H, Kim KK, Kim CH, Shin JM, No KT
Bull. Korean Chem. Soc. 2013 Sep;34(9):2680-2684

111. Energetics of Z-DNA Binding Protein-Mediated Helicity Reversals in DNA, RNA, and DNA-RNA Duplexes.
Bae S, Kim Y, Kim D, Kim KK, Kim YG*, Hohng S
J. Phys. Chem. B, 2013 Oct 10, 117 (44): 13866?3871

110. Structure-based elucidation of the regulatory mechanism for aminopeptidase activity.
Ta HM, Bae S, Han S, Song J, Ahn TK, Hohng S, Lee S, Kim KK.
Acta Crystallogr D Biol Crystallogr. 2013 Sep;69(Pt 9):1738-47

109. Structural and functional analyses of a bacterial homologue of hormone-sensitive lipase from a metagenomic library.
Ngo TD, Ryu BH, Ju H, Jang E, Park K, Kim KK, Kim TD.
Acta Crystallogr D Biol Crystallogr. 2013 Sep;69(Pt 9):1726-37

108. Investigation of the heating properties of platinum nanoparticles under a radiofrequency current
San BH, Moh SH, Kim KK
Int J Hyperthermia. 2013;29(2):99-105

107. Synthesis and electric characterization of protein-shelled CdSe quantum dots.
Moh SH, San BH, Kulkarni A, Kim T, Kim KK
J. Mater. Chem.C, 2013 Mar 7, 1 (13), 2412 - 2415

106. Size-controlled synthesis and characterization of CoPt nanoparticles using protein shells.
San BH, Lee S, Moh SH, Park JG, Lee JH, Hwang HY, Kim KK
J. Mater. Chem.B, 2013 Mar 7; 1(10) 1453-1460

105. DNA sensing-independent inhibition of herpes simplex virus 1 replication by DAI/ZBP1.
Pham TH, Kwon KM, Kim YE, Kim KK, Ahn JH
J Virol. 2013 Mar;87(6):3076-86

104. Characterization, Crystallization, and Preliminary X-ray Diffraction Analysis of a New (S)-specific Esterase (pfEstA) from Pseudomonas fluorescens KCTC 1767: Enantioselectivity for Industrial Applications
Kim S, Ngo TD, Kim KK, Kim TD
Acta Crystallogr Sect F Struct Biol Cryst Commun. 2012 Nov (in press)

103. One-step immobilization and purification of his-tagged enzyme using poly (2-acetamidoacrylic acid) hydrogel
Ha EJ,Kim KK, Park HS, Lee SG, Lee JO, An SSA, Paik HJ
Macormolecular Research 2012 Oct, . [Epub ahead of print]

102. EZH2 Generates a Methyl Degron that Is Recognized by the DCAF1/DDB1/CUL4 E3 Ubiquitin Ligase Complex.
Lee JM, Lee JS, Kim H, Kim K, Park H, Kim JY, Lee SH, Kim IS, Kim J, Lee M, Chung CH, Seo SB, Yoon JB, Ko E, Noh DY, Kim KI, Kim KK, Baek SH.
Mol Cell. 2012 Oct 9. pii: S1097-2765(12)00780-0. doi: 10.1016/j.molcel.2012.09.004.

101. The crystal structure of the periplasmic domain of vibrio parahaemolyticus CpxA. Kwon E, Kim DY, Ngo TD, Gross CA, Gross JD, Kim KK.
Protein Sci. 2012 Sep;21(9):1334-43

100. Structures of Staphylococcus aureus peptide deformylase in complex with two classes of new inhibitors.
Lee SJ, Lee SJ, Lee SK, Yoon HJ, Lee HH, Kim KK, Lee BJ, Lee BI, Suh SW.
Acta Crystallogr D Biol Crystallogr. 2012 Jul;68(Pt 7):784-93.

100. Identification, crystallization and preliminary X-ray diffraction analysis of esterase A from Caulobacter crescentus CB15, a family VIII lipolytic enzyme.
Ryu BH, Ngo TD, Jang E, Kim S, Ju H, Kim KK, Kim TD.
Acta Crystallogr Sect F Struct Biol Cryst Commun. 2012 May 1;68(Pt 5):560-4. Epub 2012 Apr 21.

98. The effect of protein shells on the antioxidant activity of protein-encapsulated platinum nanoparticles
San BH, Moh SH, Kim KK.
J. Mater. Chem., 2012 Feb 2:,22(5): 1774-1780

97. Characterization, amyloid formation, and immobilization of a novel SGNH hydrolase from Listeria innocua 11262.
Kim S, Bae SY, Kim SJ, Ngo TD, Kim KK, Kim TD.
Int J Biol Macromol. 2012 Jan 1;50(1):103-11

96. Crystal Structure of the LG3 Domain of Endorepellin, an Angiogenesis Inhibitor
Le VB, Kim H, Choi JK, Kim JH, Hahn MJ, Lee C, Kim KK, Hwang HY
(* co-correspondence)
Journal of Molecular Biology 2011 Nov 25;414(2):231-42

95. Amyloid formation using 1-butyl-3-methyl-imidazolium-based ionic liquids.
Bae SY, Kim S, Lee BY, Kim KK, Kim TD.
Anal Biochem. 2011 Dec 15;419(2):354-6. Epub 2011 Aug 10

94. Platinum nanoparticles encapsulated by aminopeptidase: a multifunctional bioinorganic nanohybrid catalyst
San BH, Kim S, Moh SH, Lee H, Jung DY, Kim KK.
Angew Chem Int Ed Engl. 2011 Dec 9;50(50):11924-9

93. Crystallization and diffraction analysis of Sm23: an SGNH-family arylesterase from Sinorhizobium meliloti 1021
Hwang H, Kim S, Park S, Ngo TD, Kim KK*, Kim TD* (* co-correspondence)
Acta Crystallogr Sect F Struct Biol Cryst Commun. 2011 May 1;67(Pt 5):572-4.

92. Solution structure of the Zβ domain of human DAI and its binding modes to B- and Z-DNAs
Kim K, Khayrutdinov BI, Lee CK, Cheong HK, Kang SW, Park H, Lee H, Kim YG, Rich A, Kim KK*, Jeon YH* (* co-correspondence)
Proc Natl Acad Sci U S A. 2011 Apr 26;108(17):6921-6. Epub 2011 Apr 6

91. The Zβ domain of human DAI binds to Z-DNA via a novel BZ transition pathway ?Kim HE, Ahn HC, Lee YM, Lee EH, Seo YJ, Kim YG, Kim KK, Choi BS, Lee JH
FEBS Lett. 2011 Mar 9;585(5):772-8. Epub 2011 Feb 4.

90. Intrinsic Z-DNA Is Stabilized by the Conformational Selection Mechanism of Z-DNA-Binding Proteins.
Bae S, Kim D, Kim KK*, Kim YG*, Hohng S* (* co-correspondence)
J Am Chem Soc. 2011 Feb 2;133(4):668-71.

89. Structure-based development of of a receptor activator of nuclear factor-κB ligand (RANKL)RANKL inhibitor peptide and molecular basis for osteopetrosis. Ta HM, Nguyen GT, Jin HM, Choi J, Park H, Kim N, Hwang HY, Kim KK.
Proc Natl Acad Sci U S A. 2010 Nov 23;107(47):20281-6. Epub 2010 Nov 8.

88. The crystal structure of Escherichia coli Spy.
Kwon E, Kim DY, Gross CA, Gross JD, Kim KK.
Protein Sci. 2010 Nov;19(11):2252-9.

87. Transition between B-DNA and Z-DNA: free energy landscape for the B-Z junction propagation. Lee J, Kim YG, Kim KK, Seok C.
J Phys Chem B. 2010 Aug 5;114(30):9872-81.

86. Structural basis for the negative regulation of bacterial stress response by RseB
Kim DY, Kwon EJ, Choi J, Hwang HY, Kim KK
Protein Sci. 2010 Jun;19(6):1258-63.

85. Structural basis for the reaction mechanism of UDP-glucose pyrophosphorylase.
Kim H, Choi J, Kim T, Lokanath NK, Ha SC, Suh SW, Hwang HY, Kim KK
Mol. Cells. 2010 Apr;29(4):397-405.

84. Crystal structure of Streptococcus pneumoniae Sp1610, a putative tRNA methyltransferase, in complex with S-adenosyl-L-methionine (p NA)
Minh Ta H, Kim KK
Protein Sci. 2010 Mar;19(3):617-24.

83. Z-DNA Binding Proteins as Targets for Structure-Based Virtual Screening.
Kim D, Lee YH, Hwang HY, Kim KK*, Park HJ * (* co-correspondence)
Curr Drug Targets. 2010 Mar; 11(3):335-44.

82. Structural basis for the substrate specificity of PepA from Streptococcus pneumoniae, a dodecameric tetrahedral protease.
Kim D, San BH, Moh SH, Park H, Kim DY, Lee S, Kim KK.
Biochem Biophys Res Commun. 2010 Jan 1;391(1):431-6.

81. Enhanced SUMOylation of proteins containing a SUMO-interacting motif by SUMO-Ubc9 fusion.
Kim ET, Kim KK, Matunis MJ, Ahn JH.
Biochem Biophys Res Commun. 2009 Oct 9;388(1):41-5. Epub 2009 Jul 25.

80. NMR spectroscopic elucidation of the B-Z transition of a DNA double helix induced by the Z alpha domain of human ADAR1.
Kang YM, Bang J, Lee EH, Ahn HC, Seo YJ, Kim KK, Kim YG, Choi BS, Lee JH.
J Am Chem Soc. 2009 Aug 19;131(32):11485-91.

79. Base extrusion is found at helical junctions between right- and left-handed forms of DNA and RNA.
Kim D, Reddy S, Kim DY, Rich A, Lee S, Kim KK*, Kim YG* (* co-correspondence)
Nucleic Acids Res. 2009 Jul;37(13):4353-59. Epub 2008 May 21

78. Disulfide bond as a structural determinant of prion protein membrane insertion.
Shin JY, Shin JI, Kim JS, Yang YS, Shin YK, Kim KK, Lee S, Kweon DH.
Mol Cells. 2009 Jun;27(6):673-80. Epub 2009 Jun 12.

77. Structural and functional characterization of soluble endoglin receptor.
Van Le B, Franke D, Svergun DI, Han T, Hwang HY, Kim KK.
Biochem Biophys Res Commun. 2009 Jun 12;383(4):386-91. Epub 2009 Mar 5.

76. Purification, Crystallization, and Preliminary Crystallographic Analysis of Est-Y29: A Novel Oligomeric -Lactamase.
Kim S, Joo S, Yoon S, Kim S, Moon J, Ryu Y, Kim KK*,Kim TD* (* co-correspondence)
Acta Crystallogr Sect F Struct Biol Cryst Commun. 2009 Mar 1;65(Pt 3):310-2. Epub 2009 Feb 26.

75. Crystallization and preliminary X-ray crystallographic studies of the Z-DNA binding domain of a PKR-like kinase (PKZ) in complex with Z-DNA
Kim D, Hwang HY, Kim YG, Kim KK.
Acta Crystallogr Sect F Struct Biol Cryst Commun. 2009 Mar 1;65(Pt 3):267-70. Epub 2009 Feb 26.

74. Analyzing the interaction of RseA and RseB, the two negative regulators of the E envelope stress response, using a combined bioinformatic and experimental strategy.
Ahuja N, Korkin D, Chaba R, Cezairliyan BO, Sauer RT, Kim KK, Gross CA
J Biol Chem. 2009 Feb 20;284(8):5403-13. Epub 2008 Dec 222008

73. The structures of non-CG-repeat Z-DNAs co-crystallized with the Z-DNA binding domain, hZADAR1
HA SC, Choi J, Hwang HY, Rich A, Kim YG, Kim KK
Nucleic Acids Res. 2009 Feb;37(2):629-37. Epub 2008 Dec 11.

72. The crystal structure of the second Z-DNA binding domain of human DAI (ZBP1) in complex with Z-DNA reveals an unusual binding mode to Z-DNA.
HA SC, Kim DY, Hwang HY, Rich A, Kim YG, Kim KK
Proc Natl Acad Sci U S A. 2008 Dec 30;105(52):20671-6.

71. The structural basis for the activation and peptide recognition of bacterial ClpP
Kim DY, Kim KK
Journal of Molecular Biology 2008 June 13; 379(4): 760-771.

70. Solution structures of RseA and its complex with RseB.
Jin KS, Kim DY, Rho Y, Le VB, Kwon E, Kim KK*Ree M* (* co-correspondence)
Journal of Synchrotron Radiation 2008 May 1; 15(3): 219-222.

69. The mechanism of the temperature-induced bacterial HtrA activation
Kim DY, Kwon E, Shin YK, Kweon DH*, Kim KK* (*co-correspondence)
Journal of Molecular Biology 2008 Mar 21;377(2): 410-420

68. The crystal structure of guamerin in complex with chymotrypsin and the modification for an elastase-specific inhibitor
Kim H, Chu TTT , Kim DY, Nguyuen CMT, Kim DR, Lee JL, Hahn MJ, Kim KK
Journal of Molecular Biology 2008 Feb 8;376(1): 184-192

67. Crystallization and Preliminary X-ray Studies of TON_0559, a Putative Member of the Haloacid Dehalogenase (HAD) Superfamily from Thermococcus onnurineus NA1
Nguyen CMT, Lee HS, Cho Y, Lee JH, Ha SC, Hwang HY, Kim KK
Protein and Peptide letter 2008 Feb 1; 15(2) 235-237.

66. Crystallization and preliminary X-ray studies of SdiA from Escherichia coli
Wu C, Lokanath NK, Kim DY, Nguyen L, Kim KK
Acta Crystallograph Sect F Struct Biol Cryst Commun. 2008 Jan 1;64(Pt 1):19-21.

65. Characterization of DNA binding activity of Zalpha domains from poxviruses and importance of the beta-wing regions in converting B-DNA to Z-DNA.
Quyen DV, HA SC, Lowenhaupt K, Rich A, Kim KK*, Kim YG* (* co-correspondence)
Nucleic Acid Research 2007;35(22):7714-20. Epub 2007 Nov 5.

64. Binding surface in Zβ domain from human ZBP1 does not require
conserved proline residues for Z-DNA binding and B-to-Z-DNA
conversion activities.
Quyen DV, Ha SC, Kim DY, Lee S, Kim KK*, Kim YG* (* co-correspondence)
Bull. Korean Chem. Soc. 2007 Dec 20; 28(12) 1039-1042.

63. Crystallization and preliminary X-ray studies of TO1713 from Thermococcus onnurineus NA1, a putative member of the haloacid dehalogenase (HAD) superfamily.
Le BV, Lee HS, Cho Y, Kang SG, Kim DY, Kim YG, Kim KK
Acta Crystallograph Sect F Struct Biol Cryst Commun. 2007 Dec 1;63(Pt 12):1048-50.

62. Crystal structure of the mouse p53 core domain in zinc-free state
Kwon E, Kim DY, Suh SW, Kim KK.
Proteins 2008 Jan 1;70(1):280-283 [Epub ahead of print]

61. Purification, crystallization and preliminary crystallographic analysis of Est25: a ketoprofen-specific hormone-sensitive lipase.
Kim S, Joo S, Yoon HC, Ryu Y, Kim KK*, Kim TD* (* co-correspondence)
Acta Crystallograph Sect F Struct Biol Cryst Commun. 2007 Jul 1;63(Pt 7):579-81.

60. Crystal structure of RseB and a model of its binding mode to RseA
Kim DY, Jin KS, Kwon E, Ree M, Kim KK.
Proc Natl Acad Sci U S A. 2007 May 22;104(21):8779-84. Epub 2007 May 11.

59. Identification of novel ligands for the Z-DNA binding protein by structure-based virtual screening.
Kim YG, Thai KM, Song J, Kim KK, Park HJ
Chem. Pharm. Bull Feb 2007; 55(2):340-342.

58. A peptide with alternating lysines can act as a highly specific Z-DNA binding domain.
Kim YG, Park HJ, Kim KK, Lowenhaupt, K, Rich A.
Nucleic Acids Research 2006;34(17):4937-42. Epub 2006 Sep 18

57. Intracellular localization of human ZBP1: Differential regulation by the Z-DNA binding domain, Zalpha, in splice variants.
Pham HT, Park MY, Kim KK, Kim YG, Ahn JH.
Biochem Biophys Res Commun. 2006 Sep 15;348(1):145-52.

56. Crystal Structure of Visfatin/Pre-B Cell Colony-enhancing Factor 1/Nicotinamide Phosphoribosyltransferase, Free and in Complex with the Anti-cancer Agent FK-866.
Kim MK, Lee JH, Kim H, Park SJ, Kim SH, Kang GB, Lee YS, Kim JB, Kim KK, Suh SW, Eom SH.
J Mol Biol. 2006 Sep 8;362(1):66-77.

55. Sequence-dependent kinetic behavior of protein-induced B- to Z-DNA transition
Van Quyen D, Kim KK*, Kim YG*(*co-correspondence)
Bull. Korean Chem. Soc. 2006 July 20;27(Pt 7):1459-64.

54. Biochemical characterization and preliminary X-ray crystallographic study of the domains of human ZBP1 bound to left-handed Z-DNA
Ha SC, Van Quyen D, Hwang HY, Oh DB, Brown BA 2nd, Lee SM, Park HJ, Ahn JH, Kim KK*, Kim YG*(*co-correspondence).
Biochimica et Biophysica Acta. 2006 Feb;1764(2):320-3.

53. Structure of Inorganic Pyrophosphatase from Helicobacter pylori
Wu CA, Lokanath NK, Kim DY, Park HJ, Hwang H-Y, Suh SW, Kim KK
Acta Crystallogr D Biol Crystallogr. 2005 Nov;61(Pt 11):1459-64.

52. Crystal Structure of a B-DNA-Z-DNA junction Reveals Two Extruded Bases. Ha SC, Lowenhaupt K, Rich A, Kim YG*, Kim KK* (co-correspondence)
Nature. 2005 Oct 20;437(7062):1183-6.

51. Structure and function of HtrA family proteins, the key players in protein quality control.
Kim DY, Kim KK.
J Biochem Mol Biol. 2005 May 31;38(3):266-74.

50. Crystallization and preliminary X-ray crystallographic study of the viral Za domain bound to left-handed Z-DNA
Ha SC, Oh DB, Kim KK* and Kim YG*.(* co-correspondence)
Protein and Peptide Letter 2005 May; 12(4): 391-393.

49. The target of RNAIII-activating protein(TRAP) from Staphylococcus aureus: purification, crystallization and preliminary X-ray analysis
Han Y-H, Kim Y-G, Kim DY, Ha SC, Lokanath NK, Kim KK
Biochimica et Biophysica Acta. 2005 Apr 15;1748(1):134-6.

48. Osmotin is a homolog of mammalian adiponectin and controls apoptosis in yeast through a homolog of mammalian adiponectin receptor.
Narasimhan ML, Coca MA, Jin J, Tamauchi T, Ito Y, Kadowaki T, Kim KK, Pardo JM, Damsz B, Hasegawa PM, Yun DJ, Bressan RA
Molecular Cell. 2005 Jan 21;17:1-20.

47. A poxvirus protein forms a complex with left-handed Z-DNA: crystal structure of a Yatapoxvirus Za bound to DNA
Ha SC, Lokanath NK, Quyen DV, Wu CA, Lowenhaupt K, Rich A*, Kim YG*, Kim KK* (* co-correspondence)
Proc Natl Acad Sci U S A. 2004 Oct 5;101(40):14367-72.

46. Crystallization and preliminary X-ray crystallographic study of UDP-glucose pyrophosphorylase (UGPase) from Helicobacter pylori
Kim H, Wu CA, Kim DY, Han YJ, Ha SC, Kim CS, Suh SW, Kim KK
Acta Crystallogr D Biol Crystallography, 2004 Aug;60(Pt 8):1447-9.

45. Pressure activation of the chaperone function of small heat shock proteins
Toelgyesi F, Bode CS, Smeller L, Kim DR, Kim KK, Heremans K, Fidy J
Cellular and Molecular Biology 2004 June;50(4):361-369.

44. Crystallization and preliminary X-ray crystallographic study of a leech protease inhibitor guamerin and its complex with bovine pancreatic chymotrypsin
Kim DR, Kim DY, Chu TTT , Jung KH, Kim KK
Biochimica et Biophysica Acta 2004 Jun 1;1699(1-2):285-7

43. Functional Identification of the SecB Homologue in Methanococcus jannaschii and Direct Interaction of SecB with Trigger Factor
Ha SC, Lee TH, Cha SS, Kim KK
Biochem Biophys Res Commun 2004 March 19;315(4): 1039-1044.

42. Evidence that the Vaccinia virulence factor E3L binds to Z-DNA in vivo - implications for development of a therapy for poxvirus infection.
Kim YG, Lowenhaupt K, Oh DB, Kim KK, Rich A
Proc Natl Acad Sci U S A. 2004 Feb 10;101(6):1514-8.

41. Bound water molecule is crucial in initiating auto-catalytic precursor activation in a N-terminal hydrolase.
Yoon J, Oh B, Kim K, Park J, Han D, Kim KK, Cha SS, Lee D, Kim Y.
J Biol Chem. 2004 Jan 2;279(1):341-347.

40. Position of Pro and Ser near Glu7.32 in the Extracellular Loop 3 of Mammalian and Nonmammalian Gonadotropin-Releasing Hormone (GnRH) Receptors Is a Critical Determinant for Differential Ligand Selectivity for Mammalian GnRH and Chicken GnRH-II.
Wang C, Yun O, Maiti K, Oh DY, Kim KK, Chae CH, Lee CJ, Seong JY, Kwon HB
Molecular Endocrinology 2004 Jan; 18(1): 105-116.

39. Crystal Structure of Osmotin, a Plant Antifungal Protein.
Min K, Ha SC, Hasegawa PM, Bressan RA, Yun D-J, Kim KK.
Proteins: Structure Function and Genetics 2004 Jan 2;54(1): 170 -173.

38. Crystal structure of ClpX molecular chaperone from Helicobacter Pylori
Kim DY, Kim KK
J Biol Chem. 2003 Dec 12;278(50):50664-70.

37. Purification, crystallization and preliminary X-ray studies of ClpX from Helicobacter Pylori
Kim DY, Wu CA, Kim DR, Ha SC, Han Y-H, Kim KK
Acta Crystallogr D Biol Crystallogr. 2003 Sep 1; 59(9): 1642-1644.

36. Activation mechanism of HSP16.5 from Methanococcus jannaschii
Kim DR, Lee I, Ha SC, Kim KK
Biochem Biophys Res Commun 2003 August 8;307(4): 991-998.

35. On the mechanism of chaperone activity of the small heat-shock protein of Methanococcus jannaschii
Kim R, Lai L, Lee HH, Cheong GW, Kim KK, Wu Z, Yokota H, Marqusee S, Kim SH.
Proc Natl Acad Sci U S A 2003 Jul 8; 100(14): 8151-8155.

34. Crystal structure of the protease domain of a heat-shock protein HtrA from Thermotoga maritima
Kim DY, Kim DR, Ha SC, Lokanath NK, Lee CJ, Hwang HY, Kim KK
J Biol Chem 2003 Feb 21; 278(8); 6543-6551

33. Dynamic and clustering model of bacterial chemotaxis receptors: Structural basis for signaling and high sensitivity
Kim S-H, Wang W, Kim KK
Proc. Natl. Acad. Aci. USA 2002 Sep 3;99(18):11611-5.

32. Cloning, purification, crystallization and preliminary X-ray studies of RFC boxes II-VIII of replication factor C from Methanococcus jannaschii
Lee I, Lokanath NK, Min K, Ha SC, Kim DY, Kim KK
Acta Crystallogr D Biol Crystallogr. 2002 Mar;58(Pt 3): 519-521

31. Crystallization and preliminary X-ray studies of the protease domain of the heat shock protein HtrA from Thermotoga maritima
Kim DY, Kim KK
Acta Crystallogr D Biol Crystallogr. 2002 Jan; 58(Pt 1): 170-172

30. Crystal structure of the MJ0490 gene product of the hyperthermophilic archaebacterium Methanococcus jannaschii, a novel member of the lactate/malate family of dehydrogenases.
Lee BI, Chang C, Cho SJ, Eom SH, Kim KK, Yu YG, Suh SW.
J Mol Biol 2001 Apr 13;307(5):1351-62

29. Crystallization and preliminary crystallographic studies of
an antimicrobial protein from Pharbitis nil
Ha SC, Min K, Koo C, Kim Y, Yun DJ, Cho MJ, Kim KK
Acta Crystallogr D Biol Crystallogr. 2001 Feb;57(Pt 2):263-265.

28. Nucleoside diphosphate kinase from the hyperthermophilic archaeon methanococcus jannaschii: overexpression, crystallization and preliminary X-ray crystallographic analysis.
Min K, Song HK, Chang C, Lee JY, Eom SH, Kim KK, Yu YG, Suh SW
Acta Crystallogr D Biol Crystallogr. 2000 Nov;56 (Pt 11):1485-7.

27. Crystallization and preliminary X-ray diffraction analysis of Saccharomyces cerevisiae ygr203p, a homologue of acr2 arsenate reductase.
Moon J, Kim YS, Lee JY, Cho SJ, Song HK, Cho JH, Kim BM, Kim KK, Suh SW.
Acta Crystallogr D Biol Crystallogr. 2000 Jun;56 (Pt 6):778-80.

26. Crystal Structure of the Ribosome Recycling Factor from Escherichia coli.
Kim KK, Min S, Suh SW.
EMBO J. 2000 May 15;19(10), 2362-2370.

25. Crystal structure of a fibrillarin homologue from Methanococcus jannaschii, a hyperthermophile, at 1.6 A resolution.
Wang H, Boisvert D, Kim KK, Kim R, Kim SH.
EMBO J. 2000 Feb 1;19(3):317-23.

24. Crystallization and Preliminary Crystallographic Studies of Ribosome Recycling Factor from Escherichia coli.
Yun J, Kim W, Ha SC, Eom SH, Suh SW, Kim KK.
Acta Crystallogr D Biol Crystallogr. 2000 Jan;56(Pt 1):84-5.

23. Four Helical-Bundle Structure of the Cytoplasmic Domain of a Serine Chemotaxis Receptor.
Kim KK, Yokota H, & Kim S-H.
Nature. 1999 Aug 19;400(6746):787-92.

22. Structure-Based Assignment of the Biochemical Function of a Hypothetical Protein: a Test Case of Structural Genomics.
Zarembinski TI, Hung LW, Mueller-Dieckmann HJ, Kim KK, Yokota H, Kim R, Kim SH.
Proc Natl Acad Sci U S A. 1998 Dec 22;95(26):15189-93.

21. Crystal Structure of Eukaryotic Translation Initiation Factor 5A from Methanococcus janaschii at 1.8 A Resolution.
Kim KK, Hung LW, Yokota H, Kim R, Kim SH.
Proc Natl Acad Sci U S A. 1998 Sep 1;95(18):10419-24.

20. Crystal Structure of a Small Heat-Shock Protein.
Kim KK, Kim R, Kim SH.
Nature. 1998 Aug 6;394(6693):595-9.

19. Small Heat Shock Protein of Methanococcus janaschii, a Hyperthermophile.
Kim R, Kim KK, Yokota H, Kim SH.
Proc Natl Acad Sci U S A. 1998 Aug 4;95(16):9129-33.

18. Electron Transfer by Domain Movement in Cytochrome bc1.
Zhang Z, Huang L, Shulmeister VM, Chi YI, Kim KK, Hung LW, Crofts AR, Berry EA, Kim SH.
Nature. 1998 Apr 16;392(6677):677-84.

17. Purification and Preliminary X-ray Crystallographic Data of Small Heat Shock Protein Homolog from Methanococcus jannaschii, a Hyperthermophile.
Kim KK, Yokota H, Santoso S, Lerner D, Kim R, Kim SH.
J Struct Biol. 1998 Jan;121(1):76-80.

16. Crystal Structure of Carboxylesterase from Pseudomonas fluorescens: an  Hydrolase Fold with Broad Substrate Specificity.
Kim KK, Song HK, Shin DH, Hwang KY, Choe S, Yoo OJ, Suh SW.
Structure. 1997 Dec 15;5(12):1571-84.

15. High Resolution Crystal Structures of 5-3-Ketosteroid Isomerase with and without a Reaction Intermediate Analogue.
Kim, S. W. Cha, S.-S., Cho, H.-S., Kim, J.-S., Ha, N.-C., Cho, M.-J., Joo, S., Kim, K. K., Choi, K. Y. & Oh, B.-H. (1997)
Biochemistry 36, 14030-14036.

14. Cloning, Expression and Crystallization of a Hyperthermophile Protein that is Homologous to the Eukaryotic Translation Initiation Factor, eIF5A.
Kim KK, Yokota H, Kim R, Kim SH.
Protein Sci. 1997 Oct;6(10):2268-70.

13. The Crystal Structure of a Triacylglycerol Lipase from Pseudomonas cepacia Reveals a Highly Open Conformation in the Absence of a bound Inhibitor.
Kim KK, Song HK, Shin DH, Hwang KY, Suh SW.
Structure. 1997 Feb 15;5(2):173-85.

12. Three-dimensional Structure of Human Cyclin H, a Positive Regulator of the CDK-Activating Kinase (Cover Article).
Kim KK, Chamberlin HM, Morgan DO, Kim SH.
Nat Struct Biol. 1996 Oct;3(10):849-55.


11. High-resolution Crystal Structure of the Non-Specific Lipid-Transfer Protein from Maize Seedlings.
Shin DH, Lee JY, Hwang KY, Kim KK, Suh SW.
High-resolution crystal structure of the non-specific lipid-transfer protein from maize seedlings.

10. Crystallization, Molecular Replacement Solution, and Refinement of Tetrameric -amylase from Sweet Potato.
Cheong, C. G., Eom, S. H., Chang, C., Shin, D. H., Song, H. K., Min, K., Moon, J. H., Kim, K. K., Hwang, K. Y., & Suh, S. W. (1995)
Proteins: Struct. Funct. Genet. 21, 105-117.

9. Crystallization and Preliminary X-ray Crystallographic Study of Ribosome-Inactivating Protein from Barly Seeds.
Song, H. K., Hwang, K. Y., Kim, K. K., & Suh, S. W. (1994)
Acta. Crystallogr. D50, 910-912.

8. Crystallization and Preliminary X-ray Crystallographic Analysis of Phospholipid Transfer Protein from Maize Seedlings.
Shin, D. H., Hwang, K. Y., Kim, K. K., Kim, S., Sweet, R. M., & Suh, S. W. (1994)
Proteins: Struct. Funct. Genet. 19, 80-83.

7. Crystallization and Preliminary X-ray Crystallographic Analysis of Chitinase from Barley Seeds.
Song, H. K., Hwang, K. Y., Kim, K. K., & Suh, S. W. (1993)
Proteins: Struct. Funct. Genet. 17, 107-109.

6. Crystallization and Preliminary X-ray Crystallographic Study of the Protease Inhibitor Ecotin.
Shin, D. H., Hwang, K. Y., Kim, K. K., Lee, H. R., Lee, C. S., Chung, C. H., & Suh, S. W. (1993)
J. Mol. Biol. 229, 1157-1158.

5. Crystallization and Preliminary X-ray Crystallographic Study of Probable Amylase/Protease Inhibitor-B from Rice Seeds.
Hwang, K. Y., Kim, K. K., Min, K., Eom, S. H., Yu, Y. G., Kim, S., Sweet, R. M., & Suh, S. W. (1993)
J. Mol. Biol. 229, 255-257.

4. Crystallization and Preliminary X-ray Crystallographic Study of -Amylase from Bacillus subtilis.
Chang, C. S., Kim, K. K., Hwang, K. Y., Choi, M. U., & Suh, S. W. (1993)
J. Mol. Biol. 229, 235-238.

3. Crystallization and Preliminary X-ray Crystallographic Study of Carboxylesterase from Pseudomonas fluorescens.
Kim, K. K., Hwang, K. Y., Jang, W. H., Lee, H., Yoo, O. J., Choi, M. U., & Suh, S.W. (1993).
Arch. Biochem. Biophys. 302, 417-419.

2. Crystallization and Preliminary X-ray Crystallographic Study of Arylesterase from Pseudomonas fluorescens.
Kim, K. K., Hwang, K. Y., Choi, K. D., Kang, J. H., Yoo, O. J., & Suh, S. W. (1993)
Proteins: Struct. Funct. Genet. 15, 213-215.

1. Crystallization and Preliminary X-ray Crystallographic Study of Lipase from Pseudomonas cepacia.
Kim, K. K., Hwang, K. Y., Jeon, H. S., Kim, S., Sweet, R. M., Yang, C. H., & Suh, S. W. (1992)
J. Mol. Biol. 227, 1258-1262.

 

full list : Korean Journals

 

11. Structure and function of HtrA family proteins, the key players in protein quality control.
Kim DY, Kim KK.
J Biochem Mol Biol. 2005 May 31;38(3):266-74.

10.단백질결정학을 이용한 구조단백질체학(structural proteomics) 연구
생화학뉴스 2001년12호, 김경규

9. 화학에서 출발한 생체고분자의 성질 및 구조 연구방법 (김경규)
화학세계, 2000년 11월 9-12 (40권 11호)
(생명과학속의 화학 중, 유연규, 유재훈, 권병목, 김경규, 백승렬, 이건형)

8. Crystal Structure of Thermostable a-Amylase from Bacillus licheniformis Refined at 1.7 A resolution.
Hwang, K. Y., Song, H. K., Chang, C., Lee, J., Lee, S. Y., Kim, K. K., Choe, S., Sweet, R. M. & Suh, S. W. (1997)
Mol. Cells 7, 251-258.

7. Crystallization of '20S' Proteasome from Rat Liver.
Hwang, K. Y., Kim, K. K., Chung, C. H., Tanaka, K., & Suh, S. W. (1994)
Mol. Cells 4, 273-275.

6. Crystallization and Preliminary X-ray Analysis of Probable Amylase/Protease Inhibitor-A from Rice Seeds.
Min, K., Hwang, K. Y., Kim, K. K., & Suh, S. W. (1994)
Mol. Cells 4, 221-223

5. Crystallization and Preliminary X-ray Analysis of Yeast Alcohol Dehydrogenase.
Jeon, H. S., Hwang, K. Y., Shin, D. H., Kim, K. K., & Suh, S. W. (1994)
Mol. Cells 4, 63-65.

4. Crystallization of g-Glutamylcysteine Synthase from Escherichia coli.
Hwang, K. Y., Kim, K. K., Nam, Y. S., Kwak, J. H., Lee, S. Y., & Suh, S. W. (1993)
Korean J. Cryst. 4, 99-103.

3. Cystallization and Preliminary X-ray Crystallographic Study of Kunitz-Type Soybean Trypsin Inhibitor.
Lee, J. K., Song, H. K., Hwang, K. Y., Kim, K. K., & Suh, S. W. (1993).
Mol. Cells 3, 335-337.

2. The Effect of b-Octyl Glucoside on the Crystallization of Hen Egg White Lysozyme.
Lee, S. Y., Kim, K. K., Park, K. D., Hwang, K. Y., & Suh, S. W. (1992).
Mol. Cells 2, 47-51.

1. Purification and Characterization of Probable Amylase/Protease Inhibitor-B from Rice Seeds.
Park, K. D., Hwang, K. Y., Lee, S. Y., Kim, K. K., Eom, S. H., Chung, C. H., Fowler, A., & Suh, S. W. (1991)
Korean Biochem. J. 24, 308-314.